Publications

external page Link to all publications (PubMed)

2025

Silina K, Ciompi F. Cancer-Associated Lymphoid Aggregates in Histology Images: Manual and Deep Learning-Based Quantification Approaches. Methods Mol Biol. 2025;2864:231-246. doi: 10.1007/978-1-0716-4184-2_12. PMID: 39527225.

2024

Silina K, Ciompi F. Hitchhiker's guide to cancer-associated lymphoid aggregates in histology images: manual and deep learning-based quantification approaches. https://arxiv.org/abs/2403.04142

Calvanese AL, Cecconi V, Stäheli S, Schnepf D, Nater M, Pereira P, Gschwend J, Heikenwälder M, Schneider C, Ludewig B, Silina K, van den Broek M. Sustained innate interferon is an essential inducer of tertiary lymphoid structures. Eur J Immunol. 2024 Oct;54(10):e2451207. doi: 10.1002/eji.202451207. Epub 2024 Jul 9. PMID: 38980268.

van Rijthoven M, Obahor S, Pagliarulo F, van den Broek M, Schraml P, Moch H, van der Laak J, Ciompi F, Silina K. Multi-resolution deep learning characterizes tertiary lymphoid structures and their prognostic relevance in solid tumors. Commun Med (Lond). 2024 Jan 5;4(1):5. doi: 10.1038/s43856-023-00421-7. PMID: 38182879; PMCID: PMC10770129.

2023

Sato Y, Silina K, van den Broek M, Hirahara K, Yanagita M. The roles of tertiary lymphoid structures in chronic diseases. Nat Rev Nephrol. 2023 Aug;19(8):525-537. doi: 10.1038/s41581-023-00706-z. Epub 2023 Apr 12. PMID: 37046081; PMCID: PMC10092939.

Silina K. B cell-rich niches support stem-like CD8⁺ T cells in cancer microenvironment. Cancer Cell. 2023 May 8;41(5):824-825. doi: 10.1016/j.ccell.2023.04.007. PMID: 37160101.

2022

Pagliarulo F, Cheng PF, Brugger L, van Dijk N, van den Heijden M, Levesque MP, Silina K, van den Broek M. Molecular, Immunological, and Clinical Features Associated With Lymphoid Neogenesis in Muscle Invasive Bladder Cancer. Front Immunol. 2022 Jan 25;12:793992. doi: 10.3389/fimmu.2021.793992. Erratum in: Front Immunol. 2022 Jul 04;13:975797. doi: 10.3389/fimmu.2022.975797. PMID: 35145509; PMCID: PMC8821902.